Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lmac_3085Putative methyltransferase. (235 aa)    
Predicted Functional Partners:
Lmac_3086
Hypothetical protein.
       0.729
hipB
Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.688
Lmac_2017
Zip family transporter.
 
     0.683
dotA
Defect in organelle trafficking protein DotA.
  
     0.642
Lmac_2814
Protein LvrA.
  
     0.639
Lmac_3087
Peptidase C65 Otubain.
       0.639
Lmac_1095
Putative membrane protein YdgA-like protein.
  
     0.634
Lmac_0148
Tubulin-tyrosine ligase family protein.
  
     0.629
Lmac_2668
Protein IcmE (DotG).
  
     0.618
Lmac_1481
6-pyruvoyl tetrahydropterin synthase.
  
    0.602
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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