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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB84073.1Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
AMB86766.1
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.863
AMB86767.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.807
AMB86066.1
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.804
AMB83847.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.803
AMB87479.1
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.797
AMB86972.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.793
AMB88333.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.728
AMB86970.1
Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.646
AMB86769.1
Pilus assembly protein TapA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.
 
   
 0.642
AMB87930.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.637
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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