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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB84833.1Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology. (810 aa)    
Predicted Functional Partners:
AMB84834.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.929
AMB86630.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.900
AMB88184.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.700
AMB85886.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.700
AMB85935.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.700
AMB86732.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.700
AMB87795.1
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.700
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.621
AMB86203.1
Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.615
AMB86426.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.604
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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