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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB86147.1Chromophore maturation protein PvdO; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)    
Predicted Functional Partners:
AMB86146.1
Peptidase M19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.907
AMB88304.1
Choline-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.893
AMB86148.1
Cyclic peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.891
AMB88300.1
Acyl-homoserine lactone acylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.799
AMB86140.1
Ornithine monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.788
AMB85503.1
Class V aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.774
AMB88367.1
Aminotransferase class V; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.774
AMB85731.1
Non-ribosomal peptide synthetase; Catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.756
macB
Macrolide ABC transporter ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.750
AMB84635.1
Diaminobutyrate--2-oxoglutarate aminotransferase; Catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.746
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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