STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB88309.1Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (49 aa)    
Predicted Functional Partners:
AMB86375.1
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase family.
 
 0.998
AMB85087.1
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.971
AMB87141.1
Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.971
AMB86885.1
Nitric oxide dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.
  
 
 0.960
gltB
Glutamate synthase large subunit; Catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.910
AMB83853.1
Hybrid-cluster NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.876
AMB87029.1
Phthalate 4,5-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.876
AMB83837.1
N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.859
AMB84405.1
Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.831
AMB84172.1
CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.812
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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