close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB86406.1Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)    
Predicted Functional Partners:
AMB86405.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.954
AMB86407.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.942
AMB83953.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.941
macB
Macrolide ABC transporter ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.885
AMB84112.1
Xenobiotic ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.812
AMB84858.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.807
AMB84860.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.765
AMB83954.1
Type I secretion protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.750
AMB87414.1
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.666
AMB88231.1
Serine 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.630
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.