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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB87241.1Type III secretion protein HrpI; Derived by automated computational analysis using gene prediction method: Protein Homology. (700 aa)    
Predicted Functional Partners:
AMB87250.1
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
ssaR-2
Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
AMB87249.1
Type III secretory protein EscS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.982
AMB87251.1
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
fliI-3
Type III secretion apparatus H+-transporting two-sector ATPase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.957
AMB87240.1
Type III secretion protein HrpJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.954
AMB84953.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.952
AMB88002.1
Type III secretion system protein SpaR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.951
AMB87261.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.946
ssaR
Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.943
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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