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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB87257.1Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
AMB87254.1
Type III secretion protein HrpV; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.805
AMB87258.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.803
AMB87255.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
AMB87256.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.792
AMB87259.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.602
AMB87260.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.499
AMB87262.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
AMB87261.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.483
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.