Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMB87261.1Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
AMB87256.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.985
AMB87250.1
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
AMB87249.1
Type III secretory protein EscS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.974
AMB88003.1
Type III secretion system protein SpaQ; Involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.973
AMB88393.1
Type III secretion system outer membrane pore InvG; May be involved in the export or assemby of proteins involved in the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.966
ssaR-2
Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.965
AMB84953.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
ssaR
Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
AMB88002.1
Type III secretion system protein SpaR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
AMB87241.1
Type III secretion protein HrpI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.956
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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