Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMB87295.1Hcp1 family type VI secretion system effector; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
AMB84270.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.901
AMB84271.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.893
AMB87649.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.885
AMB87736.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.885
AMB87735.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.866
AMB87650.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.857
AMB84266.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.827
AMB84275.1
Type VI secretion system lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.825
AMB88206.1
Type VI secretion protein ImpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.789
AMB84277.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.786
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.