STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB87482.1Protein XcpP; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
AMB87481.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.980
AMB86057.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.919
AMB87256.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.917
AMB88393.1
Type III secretion system outer membrane pore InvG; May be involved in the export or assemby of proteins involved in the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.917
AMB83841.1
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
 
 0.915
AMB84964.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.915
AMB86410.1
Secretin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.915
AMB87474.1
General secretion pathway protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
     
 0.865
AMB87473.1
Type II secretory protein PulM; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.859
AMB87475.1
Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.844
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.