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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB87553.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)    
Predicted Functional Partners:
AMB87557.1
Protein BatD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
AMB87556.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.970
AMB87552.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.963
AMB87555.1
BatB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.959
AMB87554.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.895
AMB87040.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.782
sbcD
Exonuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.580
AMB87559.1
Chromosome segregation protein SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
AMB87551.1
CDP-diacylglycerol pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.438
AMB87550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.408
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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