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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB87994.1Invasion protein IagB; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)    
Predicted Functional Partners:
AMB87992.1
Type III secretion system protein PrgJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.849
AMB88009.1
Invasion protein B family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.804
AMB87995.1
Invasion protein regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.788
AMB86574.1
Pilus assembly protein PilV; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.716
AMB87993.1
Protein MxiH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.713
AMB88392.1
Type III secretion system protein PrgH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.660
AMB88393.1
Type III secretion system outer membrane pore InvG; May be involved in the export or assemby of proteins involved in the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.607
AMB87991.1
Pathogenicity island 1 effector protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.570
AMB88000.1
Chaperone protein SicA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.543
AMB85329.1
Flagellar hook protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.539
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.