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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB88007.1Protein SpaM; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)    
Predicted Functional Partners:
AMB88009.1
Invasion protein B family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
AMB88001.1
Type III secretion system protein SpaS; Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
AMB88006.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.777
AMB88008.1
ATP synthase; Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells; probable catalytic subunit of a protein translocase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
AMB88005.1
Protein SpaO; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.769
AMB88004.1
Type III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
AMB88011.1
Type III secretion regulator InvE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
AMB88003.1
Type III secretion system protein SpaQ; Involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.763
AMB88002.1
Type III secretion system protein SpaR; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.760
AMB88393.1
Type III secretion system outer membrane pore InvG; May be involved in the export or assemby of proteins involved in the entry of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.760
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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