STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMB88122.1Acetone carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)    
Predicted Functional Partners:
AMB88121.1
Acetone carboxylase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AMB88123.1
Acetone carboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.744
AMB84405.1
Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.690
pxpA
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
  0.668
AMB85264.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.660
AMB85616.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamate synthase family.
  
  
  0.648
AMB85409.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.599
AMB87489.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.599
AMB85408.1
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.598
Your Current Organism:
Pseudomonas agarici
NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.