STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU84394.1Uncharacterized membrane protein SpoIIM, required for sporulation. (326 aa)    
Predicted Functional Partners:
SDU84401.1
Uncharacterized membrane protein YckC, RDD family.
    0.992
SDU84369.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
  
 0.964
SDU84388.1
Protein of unknown function.
 
    0.963
SDU84382.1
Protein of unknown function.
 
    0.962
SDU84375.1
MoxR-like ATPase.
 
    0.895
SDV08227.1
Spore maturation protein SpmA.
   
  
 0.623
SDV11342.1
Uncharacterized membrane protein YhaH, DUF805 family.
 
    0.621
SDU84408.1
Exodeoxyribonuclease I subunit C.
       0.566
SDV10869.1
Inner membrane protein.
  
     0.495
SDV07885.1
Ca-activated chloride channel family protein.
  
     0.484
Your Current Organism:
Pseudomonas mucidolens
NCBI taxonomy Id: 46679
Other names: ATCC 4685, CIP 103298, IAM 12406, JCM 2781, LMG 2223, LMG:2223, NBRC 103159, NCTC 8068, NRRL B-16, P. mucidolens
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