Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDU85683.1 | SDU86267.1 | SAMN05216202_0654 | SAMN05216202_0746 | MCP methyltransferase, CheR-type. | Flagellar protein FlgJ. | 0.662 |
SDU85683.1 | SDU96109.1 | SAMN05216202_0654 | SAMN05216202_2288 | MCP methyltransferase, CheR-type. | MCP methyltransferase, CheR-type. | 0.910 |
SDU85683.1 | ruvB | SAMN05216202_0654 | SAMN05216202_0473 | MCP methyltransferase, CheR-type. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.860 |
SDU86267.1 | SDU85683.1 | SAMN05216202_0746 | SAMN05216202_0654 | Flagellar protein FlgJ. | MCP methyltransferase, CheR-type. | 0.662 |
SDU86267.1 | SDU96109.1 | SAMN05216202_0746 | SAMN05216202_2288 | Flagellar protein FlgJ. | MCP methyltransferase, CheR-type. | 0.662 |
SDU86267.1 | SDV03345.1 | SAMN05216202_0746 | SAMN05216202_3472 | Flagellar protein FlgJ. | Chemotaxis protein methyltransferase WspC. | 0.662 |
SDU86267.1 | fliE | SAMN05216202_0746 | SAMN05216202_0758 | Flagellar protein FlgJ. | Flagellar hook-basal body complex protein FliE. | 0.991 |
SDU86267.1 | ruvB | SAMN05216202_0746 | SAMN05216202_0473 | Flagellar protein FlgJ. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.802 |
SDU96109.1 | SDU85683.1 | SAMN05216202_2288 | SAMN05216202_0654 | MCP methyltransferase, CheR-type. | MCP methyltransferase, CheR-type. | 0.910 |
SDU96109.1 | SDU86267.1 | SAMN05216202_2288 | SAMN05216202_0746 | MCP methyltransferase, CheR-type. | Flagellar protein FlgJ. | 0.662 |
SDU96109.1 | ruvB | SAMN05216202_2288 | SAMN05216202_0473 | MCP methyltransferase, CheR-type. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.860 |
SDV03345.1 | SDU86267.1 | SAMN05216202_3472 | SAMN05216202_0746 | Chemotaxis protein methyltransferase WspC. | Flagellar protein FlgJ. | 0.662 |
SDV03345.1 | ruvB | SAMN05216202_3472 | SAMN05216202_0473 | Chemotaxis protein methyltransferase WspC. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.860 |
SDV09676.1 | queA | SAMN05216202_4853 | SAMN05216202_3567 | HemY protein. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.637 |
SDV09676.1 | ruvA | SAMN05216202_4853 | SAMN05216202_0472 | HemY protein. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.469 |
SDV09676.1 | ruvB | SAMN05216202_4853 | SAMN05216202_0473 | HemY protein. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.806 |
fliE | SDU86267.1 | SAMN05216202_0758 | SAMN05216202_0746 | Flagellar hook-basal body complex protein FliE. | Flagellar protein FlgJ. | 0.991 |
fliE | ruvB | SAMN05216202_0758 | SAMN05216202_0473 | Flagellar hook-basal body complex protein FliE. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.799 |
queA | SDV09676.1 | SAMN05216202_3567 | SAMN05216202_4853 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | HemY protein. | 0.637 |
queA | ruvA | SAMN05216202_3567 | SAMN05216202_0472 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.814 |
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