STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU85095.1Alanine-synthesizing transaminase. (403 aa)    
Predicted Functional Partners:
SDV06810.1
Glutamate synthase (NADPH) large subunit.
    
 0.919
SDV06636.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.877
aroA-2
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
    
 0.797
SDU98325.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.760
SDU93649.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.755
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.747
SDU99414.1
Chorismate mutase.
 
 
 0.725
SDV03423.1
Homoserine dehydrogenase.
 
 0.702
SDV08943.1
Pyruvate carboxylase subunit B.
    
 0.690
SDV05432.1
D-lactate dehydrogenase.
  
 
 0.647
Your Current Organism:
Pseudomonas mucidolens
NCBI taxonomy Id: 46679
Other names: ATCC 4685, CIP 103298, IAM 12406, JCM 2781, LMG 2223, LMG:2223, NBRC 103159, NCTC 8068, NRRL B-16, P. mucidolens
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.