STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU89249.1Transcriptional regulator, GntR family. (226 aa)    
Predicted Functional Partners:
SDU96881.1
Transcriptional regulator, GntR family.
  
     0.769
SDU93073.1
Transcriptional regulator, GntR family.
  
  
 0.759
SDU93494.1
DNA-binding transcriptional regulator, FadR family.
  
  
 0.753
SDU93066.1
Transcriptional regulator, GntR family.
  
     0.737
SDU96984.1
Transcriptional regulator, GntR family.
  
     0.736
SDU83236.1
DNA-binding transcriptional regulator, FadR family.
  
  
 0.730
SDU95820.1
Transcriptional regulator, GntR family.
  
  
 0.714
SDU96581.1
Transcriptional regulator, GntR family.
  
  
 0.686
SDU82211.1
Transcriptional regulator, GntR family.
  
  
 0.660
SDV05423.1
Transcriptional regulator, GntR family.
  
  
 0.659
Your Current Organism:
Pseudomonas mucidolens
NCBI taxonomy Id: 46679
Other names: ATCC 4685, CIP 103298, IAM 12406, JCM 2781, LMG 2223, LMG:2223, NBRC 103159, NCTC 8068, NRRL B-16, P. mucidolens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.