Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDU85429.1 | SDU90352.1 | SAMN05216202_0611 | SAMN05216202_1357 | Aspartate kinase; Belongs to the aspartokinase family. | Peptidylprolyl isomerase. | 0.685 |
SDU90352.1 | SDU85429.1 | SAMN05216202_1357 | SAMN05216202_0611 | Peptidylprolyl isomerase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.685 |
SDU90352.1 | SDU98081.1 | SAMN05216202_1357 | SAMN05216202_2611 | Peptidylprolyl isomerase. | Protein ImuB. | 0.699 |
SDU90352.1 | SDV02102.1 | SAMN05216202_1357 | SAMN05216202_3272 | Peptidylprolyl isomerase. | Serine protease Do; Belongs to the peptidase S1C family. | 0.573 |
SDU90352.1 | SDV04467.1 | SAMN05216202_1357 | SAMN05216202_3673 | Peptidylprolyl isomerase. | Serine protease DegS. | 0.570 |
SDU90352.1 | dinB | SAMN05216202_1357 | SAMN05216202_0391 | Peptidylprolyl isomerase. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.699 |
SDU90352.1 | dnaK | SAMN05216202_1357 | SAMN05216202_3859 | Peptidylprolyl isomerase. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.574 |
SDU90352.1 | ftsW | SAMN05216202_1357 | SAMN05216202_0203 | Peptidylprolyl isomerase. | Cell division-specific peptidoglycan biosynthesis regulator FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.545 |
SDU90352.1 | htpG | SAMN05216202_1357 | SAMN05216202_0845 | Peptidylprolyl isomerase. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.889 |
SDU90352.1 | infA | SAMN05216202_1357 | SAMN05216202_1509 | Peptidylprolyl isomerase. | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.668 |
SDU90352.1 | rpsS | SAMN05216202_1357 | SAMN05216202_5278 | Peptidylprolyl isomerase. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.548 |
SDU98081.1 | SDU90352.1 | SAMN05216202_2611 | SAMN05216202_1357 | Protein ImuB. | Peptidylprolyl isomerase. | 0.699 |
SDU98081.1 | ftsW | SAMN05216202_2611 | SAMN05216202_0203 | Protein ImuB. | Cell division-specific peptidoglycan biosynthesis regulator FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.841 |
SDV02102.1 | SDU90352.1 | SAMN05216202_3272 | SAMN05216202_1357 | Serine protease Do; Belongs to the peptidase S1C family. | Peptidylprolyl isomerase. | 0.573 |
SDV02102.1 | dnaK | SAMN05216202_3272 | SAMN05216202_3859 | Serine protease Do; Belongs to the peptidase S1C family. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.403 |
SDV04467.1 | SDU90352.1 | SAMN05216202_3673 | SAMN05216202_1357 | Serine protease DegS. | Peptidylprolyl isomerase. | 0.570 |
SDV04467.1 | dnaK | SAMN05216202_3673 | SAMN05216202_3859 | Serine protease DegS. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.403 |
dinB | SDU90352.1 | SAMN05216202_0391 | SAMN05216202_1357 | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Peptidylprolyl isomerase. | 0.699 |
dinB | ftsW | SAMN05216202_0391 | SAMN05216202_0203 | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Cell division-specific peptidoglycan biosynthesis regulator FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.853 |
dnaK | SDU90352.1 | SAMN05216202_3859 | SAMN05216202_1357 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Peptidylprolyl isomerase. | 0.574 |
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