STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU93899.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
SDU93887.1
Hypothetical protein.
 
 
   0.918
SDU93907.1
Hypothetical protein.
 
     0.916
SDU93913.1
Hypothetical protein.
 
     0.883
SDU85696.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.799
SDU93892.1
Hypothetical protein.
       0.709
SDU93920.1
Hypothetical protein.
     
 0.554
SDV02861.1
Lipoprotein NlpD.
   
   0.456
SDV10216.1
Transcriptional regulator, TetR family.
  
     0.410
SDU93546.1
Membrane-bound lytic murein transglycosylase D.
    
   0.402
Your Current Organism:
Pseudomonas mucidolens
NCBI taxonomy Id: 46679
Other names: ATCC 4685, CIP 103298, IAM 12406, JCM 2781, LMG 2223, LMG:2223, NBRC 103159, NCTC 8068, NRRL B-16, P. mucidolens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.