STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV02114.1Anti sigma-E protein, RseA. (195 aa)    
Predicted Functional Partners:
SDV02108.1
Sigma E regulatory protein, MucB/RseB.
 
 
 0.999
SDV02120.1
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.993
SDV02102.1
Serine protease Do; Belongs to the peptidase S1C family.
 
 
 0.971
SDV04467.1
Serine protease DegS.
  
 
 0.944
SDU82202.1
Stringent starvation protein B.
    
 
 0.915
SDV00539.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.898
SDU84235.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.887
SDU89977.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.873
SDU91913.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.873
SDU93410.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.873
Your Current Organism:
Pseudomonas mucidolens
NCBI taxonomy Id: 46679
Other names: ATCC 4685, CIP 103298, IAM 12406, JCM 2781, LMG 2223, LMG:2223, NBRC 103159, NCTC 8068, NRRL B-16, P. mucidolens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.