STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV08484.1MFS transporter, ACS family, D-galactonate transporter. (436 aa)    
Predicted Functional Partners:
SDV08488.1
Galactonate dehydratase.
 
   
 0.797
SDV08493.1
2-keto-3-deoxy-phosphogalactonate aldolase.
 
   
 0.749
SDV08500.1
2-keto-3-deoxygalactonate kinase.
 
  
 0.678
SDU95291.1
Predicted arabinose efflux permease, MFS family.
  
     0.511
SDU82243.1
Galactarate dehydratase.
 
  
 0.485
SDU94689.1
MFS transporter, putative metabolite transport protein.
  
  
  0.439
SDV05820.1
MFS transporter, putative metabolite:H+ symporter.
  
  
  0.436
Your Current Organism:
Pseudomonas mucidolens
NCBI taxonomy Id: 46679
Other names: ATCC 4685, CIP 103298, IAM 12406, JCM 2781, LMG 2223, LMG:2223, NBRC 103159, NCTC 8068, NRRL B-16, P. mucidolens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.