STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDV12277.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (362 aa)    
Predicted Functional Partners:
SDU84980.1
Selenocysteine lyase/Cysteine desulfurase.
  
 
   0.823
SDU98362.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.796
SDV03106.1
Cysteine sulfinate desulfinase.
    
   0.796
SDV04854.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.796
SDU85352.1
Leucine rich repeat-containing protein.
 
     0.728
SDU87625.1
Polysaccharide pyruvyl transferase family protein WcaK.
  
     0.722
SDU87594.1
Hypothetical protein.
 
     0.720
SDV12281.1
Uncharacterised protein family (UPF0259).
 
     0.705
SDV03569.1
PTS system N-acetylglucosamine-specific IIB component, Glc family /PTS system N-acetylglucosamine-specific IIC component, Glc family.
  
 
 0.698
SDV03609.1
Phosphotransferase system IIB components.
  
 
 0.698
Your Current Organism:
Pseudomonas mucidolens
NCBI taxonomy Id: 46679
Other names: ATCC 4685, CIP 103298, IAM 12406, JCM 2781, LMG 2223, LMG:2223, NBRC 103159, NCTC 8068, NRRL B-16, P. mucidolens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.