STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEG18_09300Unannotated protein. (341 aa)    
Predicted Functional Partners:
CEG18_09295
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.970
CEG18_22905
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.870
CEG18_27630
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.860
GCA_000807755_01691
Unannotated protein.
 
 0.860
GCA_000807755_02664
Unannotated protein.
 
 0.860
CEG18_01665
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.860
CEG18_08350
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.859
CEG18_21860
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 0.858
CEG18_15920
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.857
CEG18_05700
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.857
Your Current Organism:
Pseudomonas nitroreducens
NCBI taxonomy Id: 46680
Other names: ATCC 33634, CCUG 12538, CIP 106747, DSM 14399, IFO 12694, JCM 2782, NBRC 12694, P. nitroreducens, Pseudomonas azelaica, strain P-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.