STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEG18_28595Unannotated protein. (450 aa)    
Predicted Functional Partners:
CEG18_28590
Unannotated protein.
 
  
 0.926
CEG18_28600
Unannotated protein.
  
  
 0.680
GCA_000807755_03519
Unannotated protein.
 
  
 0.663
CEG18_12945
Unannotated protein; Belongs to the glycerate kinase type-1 family.
 
  
 0.661
CEG18_07295
Unannotated protein.
 
  
 0.653
CEG18_28585
Unannotated protein.
 
  
 0.578
CEG18_24685
Unannotated protein.
     
 0.435
Your Current Organism:
Pseudomonas nitroreducens
NCBI taxonomy Id: 46680
Other names: ATCC 33634, CCUG 12538, CIP 106747, DSM 14399, IFO 12694, JCM 2782, NBRC 12694, P. nitroreducens, Pseudomonas azelaica, strain P-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.