STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000807755_01379Unannotated protein. (349 aa)    
Predicted Functional Partners:
GCA_000807755_01378
Unannotated protein.
       0.805
CEG18_17840
Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
 0.769
GCA_000807755_04500
Unannotated protein.
  
     0.677
GCA_000807755_05181
Unannotated protein.
  
     0.667
CEG18_27980
Unannotated protein.
  
     0.664
GCA_000807755_05197
Unannotated protein.
  
     0.652
GCA_000807755_03569
Unannotated protein.
  
     0.650
CEG18_04275
Unannotated protein.
  
 
 0.639
CEG18_14200
Unannotated protein.
  
 
   0.633
CEG18_24575
Unannotated protein.
  
     0.621
Your Current Organism:
Pseudomonas nitroreducens
NCBI taxonomy Id: 46680
Other names: ATCC 33634, CCUG 12538, CIP 106747, DSM 14399, IFO 12694, JCM 2782, NBRC 12694, P. nitroreducens, Pseudomonas azelaica, strain P-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.