Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEG18_24825 | GCA_000807755_02447 | GCA_000807755_02590 | GCA_000807755_02447 | Unannotated protein. | Unannotated protein. | 0.750 |
CEG18_24825 | GCA_000807755_02966 | GCA_000807755_02590 | GCA_000807755_02966 | Unannotated protein. | Unannotated protein. | 0.934 |
CEG18_24825 | GCA_000807755_02967 | GCA_000807755_02590 | GCA_000807755_02967 | Unannotated protein. | Unannotated protein. | 0.683 |
GCA_000807755_02447 | CEG18_24825 | GCA_000807755_02447 | GCA_000807755_02590 | Unannotated protein. | Unannotated protein. | 0.750 |
GCA_000807755_02447 | GCA_000807755_02966 | GCA_000807755_02447 | GCA_000807755_02966 | Unannotated protein. | Unannotated protein. | 0.973 |
GCA_000807755_02447 | GCA_000807755_02967 | GCA_000807755_02447 | GCA_000807755_02967 | Unannotated protein. | Unannotated protein. | 0.718 |
GCA_000807755_02447 | fadH | GCA_000807755_02447 | GCA_000807755_02303 | Unannotated protein. | Unannotated protein. | 0.551 |
GCA_000807755_02966 | CEG18_24825 | GCA_000807755_02966 | GCA_000807755_02590 | Unannotated protein. | Unannotated protein. | 0.934 |
GCA_000807755_02966 | GCA_000807755_02447 | GCA_000807755_02966 | GCA_000807755_02447 | Unannotated protein. | Unannotated protein. | 0.973 |
GCA_000807755_02966 | GCA_000807755_02967 | GCA_000807755_02966 | GCA_000807755_02967 | Unannotated protein. | Unannotated protein. | 0.935 |
GCA_000807755_02966 | fadH | GCA_000807755_02966 | GCA_000807755_02303 | Unannotated protein. | Unannotated protein. | 0.872 |
GCA_000807755_02966 | hscB | GCA_000807755_02966 | GCA_000807755_03981 | Unannotated protein. | Unannotated protein; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.927 |
GCA_000807755_02966 | iscA | GCA_000807755_02966 | GCA_000807755_03980 | Unannotated protein. | Unannotated protein; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family. | 0.929 |
GCA_000807755_02966 | iscS | GCA_000807755_02966 | GCA_000807755_03978 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.981 |
GCA_000807755_02966 | iscU | GCA_000807755_02966 | GCA_000807755_03979 | Unannotated protein. | Unannotated protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.984 |
GCA_000807755_02966 | iscX | GCA_000807755_02966 | GCA_000807755_03984 | Unannotated protein. | Unannotated protein. | 0.932 |
GCA_000807755_02966 | nuoC | GCA_000807755_02966 | GCA_000807755_01415 | Unannotated protein. | Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.994 |
GCA_000807755_02967 | CEG18_24825 | GCA_000807755_02967 | GCA_000807755_02590 | Unannotated protein. | Unannotated protein. | 0.683 |
GCA_000807755_02967 | GCA_000807755_02447 | GCA_000807755_02967 | GCA_000807755_02447 | Unannotated protein. | Unannotated protein. | 0.718 |
GCA_000807755_02967 | GCA_000807755_02966 | GCA_000807755_02967 | GCA_000807755_02966 | Unannotated protein. | Unannotated protein. | 0.935 |
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