STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000807755_03588Unannotated protein. (100 aa)    
Predicted Functional Partners:
GCA_000807755_03589
Unannotated protein.
       0.799
GCA_000807755_03587
Unannotated protein.
 
     0.741
GCA_000807755_04218
Unannotated protein.
  
     0.627
GCA_000807755_03590
Unannotated protein.
       0.610
GCA_000807755_03569
Unannotated protein.
  
     0.587
GCA_000807755_05131
Unannotated protein.
  
     0.466
CEG18_06285
Unannotated protein.
  
     0.449
GCA_000807755_00266
Unannotated protein.
  
     0.424
GCA_000807755_05735
Unannotated protein.
  
     0.419
CEG18_09100
Unannotated protein.
  
    0.417
Your Current Organism:
Pseudomonas nitroreducens
NCBI taxonomy Id: 46680
Other names: ATCC 33634, CCUG 12538, CIP 106747, DSM 14399, IFO 12694, JCM 2782, NBRC 12694, P. nitroreducens, Pseudomonas azelaica, strain P-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.