STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEG18_04500Unannotated protein. (346 aa)    
Predicted Functional Partners:
CEG18_04485
Unannotated protein.
 
     0.876
CEG18_24655
Unannotated protein.
  
     0.759
CEG18_01355
Unannotated protein.
  
     0.731
CEG18_18250
Unannotated protein.
  
     0.683
CEG18_25280
Unannotated protein.
  
     0.677
CEG18_12895
Unannotated protein.
  
     0.676
CEG18_21685
Unannotated protein.
  
     0.673
CEG18_00890
Unannotated protein.
  
     0.671
CEG18_06260
Unannotated protein.
  
     0.665
CEG18_26835
Unannotated protein.
  
     0.652
Your Current Organism:
Pseudomonas nitroreducens
NCBI taxonomy Id: 46680
Other names: ATCC 33634, CCUG 12538, CIP 106747, DSM 14399, IFO 12694, JCM 2782, NBRC 12694, P. nitroreducens, Pseudomonas azelaica, strain P-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.