Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEG18_06165 | GCA_000807755_04538 | GCA_000807755_01628 | GCA_000807755_04538 | Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Unannotated protein. | 0.736 |
GCA_000807755_02168 | GCA_000807755_04538 | GCA_000807755_02168 | GCA_000807755_04538 | Unannotated protein. | Unannotated protein. | 0.948 |
GCA_000807755_02168 | clpS | GCA_000807755_02168 | GCA_000807755_01399 | Unannotated protein. | Unannotated protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.966 |
GCA_000807755_02168 | clpX | GCA_000807755_02168 | GCA_000807755_00051 | Unannotated protein. | Unannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.451 |
GCA_000807755_02168 | groL | GCA_000807755_02168 | GCA_000807755_02721 | Unannotated protein. | Unannotated protein; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.744 |
GCA_000807755_02168 | groS | GCA_000807755_02168 | GCA_000807755_02720 | Unannotated protein. | Unannotated protein; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.791 |
GCA_000807755_04538 | CEG18_06165 | GCA_000807755_04538 | GCA_000807755_01628 | Unannotated protein. | Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.736 |
GCA_000807755_04538 | GCA_000807755_02168 | GCA_000807755_04538 | GCA_000807755_02168 | Unannotated protein. | Unannotated protein. | 0.948 |
GCA_000807755_04538 | clpA | GCA_000807755_04538 | GCA_000807755_01398 | Unannotated protein. | Unannotated protein; Belongs to the ClpA/ClpB family. | 0.941 |
GCA_000807755_04538 | clpB | GCA_000807755_04538 | GCA_000807755_02291 | Unannotated protein. | Unannotated protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. | 0.941 |
GCA_000807755_04538 | clpS | GCA_000807755_04538 | GCA_000807755_01399 | Unannotated protein. | Unannotated protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.822 |
GCA_000807755_04538 | clpX | GCA_000807755_04538 | GCA_000807755_00051 | Unannotated protein. | Unannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.998 |
GCA_000807755_04538 | def | GCA_000807755_04538 | GCA_000807755_01575 | Unannotated protein. | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.719 |
GCA_000807755_04538 | def-2 | GCA_000807755_04538 | GCA_000807755_05931 | Unannotated protein. | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.719 |
GCA_000807755_04538 | groL | GCA_000807755_04538 | GCA_000807755_02721 | Unannotated protein. | Unannotated protein; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.873 |
GCA_000807755_04538 | groS | GCA_000807755_04538 | GCA_000807755_02720 | Unannotated protein. | Unannotated protein; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.943 |
clpA | GCA_000807755_04538 | GCA_000807755_01398 | GCA_000807755_04538 | Unannotated protein; Belongs to the ClpA/ClpB family. | Unannotated protein. | 0.941 |
clpA | clpS | GCA_000807755_01398 | GCA_000807755_01399 | Unannotated protein; Belongs to the ClpA/ClpB family. | Unannotated protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.995 |
clpA | clpX | GCA_000807755_01398 | GCA_000807755_00051 | Unannotated protein; Belongs to the ClpA/ClpB family. | Unannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.548 |
clpA | groL | GCA_000807755_01398 | GCA_000807755_02721 | Unannotated protein; Belongs to the ClpA/ClpB family. | Unannotated protein; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.784 |
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