STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000807755_06702Unannotated protein. (248 aa)    
Predicted Functional Partners:
GCA_000807755_06701
Unannotated protein.
     0.972
CEG18_15380
Unannotated protein.
 
 
 0.731
CEG18_23130
Unannotated protein.
 
 
 0.725
CEG18_06515
Unannotated protein.
 
 
 0.724
CEG18_23135
Unannotated protein.
  
     0.714
CEG18_20550
Unannotated protein.
 
 
 0.670
CEG18_19050
Unannotated protein.
   
  0.658
CEG18_10395
Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.605
pheA
Unannotated protein.
   
 
 0.556
CEG18_25540
Unannotated protein.
  
   
 0.503
Your Current Organism:
Pseudomonas nitroreducens
NCBI taxonomy Id: 46680
Other names: ATCC 33634, CCUG 12538, CIP 106747, DSM 14399, IFO 12694, JCM 2782, NBRC 12694, P. nitroreducens, Pseudomonas azelaica, strain P-6
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.