Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37265.1Transposase. (568 aa)    
Predicted Functional Partners:
EFL39460.1
Conserved hypothetical protein.
  
     0.516
EFL37264.1
Conserved hypothetical protein.
       0.491
EFL37266.1
Hypothetical protein.
       0.474
EFL42475.1
Thioesterase.
  
     0.472
EFL41283.1
Tn3 family transposase.
  
     0.469
EFL38609.1
Transposase for transposon.
  
     0.441
EFL37226.1
Response regulator receiver protein.
  
    0.438
EFL38114.1
AAA family ATPase.
  
     0.412
EFL37212.1
Response regulator receiver protein.
  
    0.406
EFL38115.1
Conserved hypothetical protein.
  
     0.400
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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