Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37289.1Nodulation protein nolNO. (576 aa)    
Predicted Functional Partners:
EFL37290.1
Thymidylate synthase.
 
     0.824
EFL37288.1
Conserved hypothetical protein.
       0.793
EFL37292.1
HAD-superfamily hydrolase, subfamily IA.
       0.793
EFL37291.1
Conserved hypothetical protein.
       0.792
EFL38231.1
HAD-superfamily hydrolase subfamily IIIA; Truncated CDS.
 
    0.749
EFL37287.1
Conserved hypothetical protein.
 
     0.711
EFL38230.1
Glycosyl transferase, family 9.
 
    0.656
EFL37763.1
Acetyl xylan esterase.
     
  0.595
EFL37284.1
Phosphoglycerate mutase.
       0.571
EFL37285.1
Phosphotransferase enzyme family protein.
       0.571
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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