Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37463.1Spore-associated protein A. (149 aa)    
Predicted Functional Partners:
EFL38670.1
PE-PGRS family protein.
  
     0.660
EFL40793.1
Calcium binding protein.
  
     0.653
EFL39393.1
Secreted protein.
  
     0.648
EFL39844.1
Secreted protein.
  
     0.641
EFL40923.1
Membrane protein.
  
    0.608
EFL39783.1
Conserved hypothetical protein.
  
     0.598
EFL40603.1
ABC transport system transmembrane protein; Unextendable partial coding region.
  
     0.579
EFL41364.1
Conserved hypothetical protein.
  
     0.569
EFL41515.1
Aminotransferase; Unextendable partial coding region.
  
     0.536
EFL39213.1
Epi-isozizaene synthase.
  
     0.526
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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