Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37489.1roadblock/LC7 domain-containing protein. (133 aa)    
Predicted Functional Partners:
EFL37491.1
ATP/GTP-binding protein.
 
   0.986
EFL37488.1
Sensor histidine kinase.
 
     0.971
EFL37490.1
Conserved hypothetical protein.
 
     0.971
EFL40754.1
ATP/GTP-binding protein.
 
 
 0.917
EFL41616.1
ATP/GTP-binding protein.
 
   0.899
EFL39452.1
ATP/GTP-binding protein.
 
   0.893
EFL38906.1
ATP/GTP-binding protein.
 
 
 0.892
EFL38910.1
ATP/GTP-binding protein.
 
 
 0.892
EFL42517.1
ATP/GTP-binding protein.
 
   0.891
EFL37239.1
ATP/GTP-binding protein.
 
   0.890
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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