Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37525.1Hydrogen:quinone oxidoreductase. (593 aa)    
Predicted Functional Partners:
EFL37524.1
Conserved hypothetical protein.
 
 0.999
EFL37526.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
 
   
 0.975
EFL37531.1
Hydrogenase maturation protein HupD.
 
 
 0.965
EFL37529.1
Conserved hypothetical protein.
 
 
 0.943
EFL37527.1
Conserved hypothetical protein.
 
     0.936
EFL37528.1
Conserved hypothetical protein.
 
     0.936
EFL43517.1
Hydrogenase/sulfur reductase, delta subunit.
  
 0.930
EFL37530.1
Phage head-tail adaptor.
 
 
 0.927
EFL37536.1
Hydrogenase expression/formation protein HypD.
 
 
 0.921
EFL37534.1
Hydrogenase maturation protein HypF.
 
 
 
 0.902
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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