Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37533.1Hydrogenase accessory protein HypB. (275 aa)    
Predicted Functional Partners:
EFL37532.1
Hydrogenase nickel incorporation protein HypA.
 
 
 0.982
EFL37536.1
Hydrogenase expression/formation protein HypD.
 
  
 0.978
EFL37535.1
Hydrogenase assembly chaperone HypC/HupF.
 
  
 0.976
EFL37531.1
Hydrogenase maturation protein HupD.
 
   
 0.933
EFL37524.1
Conserved hypothetical protein.
 
  
 0.928
EFL37534.1
Hydrogenase maturation protein HypF.
 
   
 0.915
EFL37525.1
Hydrogen:quinone oxidoreductase.
 
   
 0.901
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
 
 0.758
EFL37526.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
 
   
 0.715
EFL43518.1
Conserved hypothetical protein.
 
   
 0.703
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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