Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37554.1F5/8 type C domain-containing protein. (681 aa)    
Predicted Functional Partners:
EFL37555.1
Conserved hypothetical protein.
       0.783
EFL37556.1
Regulatory protein.
       0.535
EFL37557.1
Integral membrane protein.
 
     0.514
EFL42200.1
Oxidoreductase, molybdopterin-binding.
  
     0.482
EFL37853.1
Saccharopine dehydrogenase.
  
     0.477
EFL42190.1
Conserved hypothetical protein.
  
     0.470
EFL38192.1
IucA/IucC family siderophore biosynthesis protein.
  
     0.425
EFL37558.1
Membrane protein.
 
     0.409
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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