STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL37563.12-hydroxyacid-family dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (341 aa)    
Predicted Functional Partners:
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
 
 0.902
EFL37567.1
DeoR-family transcriptional regulator.
 
     0.806
EFL37562.1
Conserved hypothetical protein.
 
     0.786
EFL37564.1
ABC-type sugar transport system, permease component.
 
     0.757
EFL37565.1
ABC-type sugar transport system, permease component.
 
     0.751
EFL39170.1
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
     
 0.710
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
  
 
 0.689
EFL39776.1
Ferredoxin oxidoreductase, alpha subunit.
  
 
 0.689
EFL42472.1
Lysine monooxygenase.
    
 0.684
EFL41265.1
Sugar phosphate isomerase/epimerase.
 
     0.584
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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