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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL37572.1Radical SAM domain-containing protein. (287 aa)    
Predicted Functional Partners:
EFL37573.1
Coproporphyrinogen III oxidase.
 
  
 0.976
EFL37574.1
Conserved hypothetical protein.
 
     0.969
EFL37575.1
Conserved hypothetical protein.
 
    0.907
EFL37578.1
Conserved hypothetical protein.
 
     0.874
EFL37579.1
Conserved hypothetical protein.
 
     0.871
EFL37576.1
WGR domain-containing protein; Truncated CDS; unextendable partial coding region.
 
    0.856
EFL37577.1
WGR domain-containing protein; Truncated CDS; unextendable partial coding region.
 
    0.856
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.735
EFL41711.1
Alpha-amylase.
    
 0.619
EFL38929.1
Sensory box/GGDEF domain/EAL domain-containing protein.
     
 0.560
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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