Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37610.1DoxX family protein. (177 aa)    
Predicted Functional Partners:
EFL37975.1
Formate dehydrogenase, beta subunit.
     
  0.621
EFL38371.1
AP endonuclease, family 2.
  
  
 0.602
EFL41869.1
Conserved hypothetical protein.
    
 
 0.572
EFL37509.1
Calcium-translocating P-type ATPase, PMCA-type; Truncated CDS; unextendable partial coding region.
   
  0.440
EFL37745.1
Calcium-translocating P-type ATPase, PMCA-type.
   
  0.440
EFL40739.1
E1-E2 family cation-transporting ATPase.
   
  0.440
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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