Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37669.1Conserved hypothetical protein. (42 aa)    
Predicted Functional Partners:
EFL38870.1
Conserved hypothetical protein.
  
     0.667
EFL41910.1
Branched chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
    
   0.615
EFL43119.1
Branched-chain amino acid ABC transport permease; Belongs to the binding-protein-dependent transport system permease family.
    
   0.615
EFL39905.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.594
EFL37928.1
Conserved hypothetical protein.
  
    0.558
EFL37781.1
Conserved hypothetical protein.
   
    0.501
EFL38722.1
Conserved hypothetical protein.
   
    0.501
EFL39675.1
Membrane protein.
   
    0.501
EFL42043.1
Secreted lyase.
   
    0.501
EFL42712.1
Secreted lyase.
   
    0.501
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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