Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37778.1LacI family transcriptional regulator. (343 aa)    
Predicted Functional Partners:
EFL37775.1
Extracellular solute-binding protein.
 
     0.831
EFL37776.1
ABC-type sugar transport system, permease component.
       0.793
EFL37777.1
ABC-type sugar transport system, permease component.
       0.793
EFL41895.1
Glutamate synthase large subunit.
    
 
 0.759
EFL37773.1
Galactosidase.
 
     0.729
EFL37780.1
MarR-family transcriptional regulator.
       0.690
EFL38677.1
HPr family phosphocarrier.
 
 
 
 0.673
EFL37481.1
PTS system, IIBC component.
    
 0.567
EFL37779.1
Glyoxalase.
       0.566
EFL39371.1
Syringomycin synthetase.
    
   0.557
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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