STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL37818.1DNA-binding protein. (212 aa)    
Predicted Functional Partners:
EFL42285.1
Conserved hypothetical protein.
 
 0.836
EFL37819.1
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.801
EFL37823.1
Phosphorylase.
  
    0.775
EFL37822.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
  
    0.774
EFL37825.1
Squalene-hopene cyclase.
       0.774
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
    
  0.735
EFL37826.1
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.699
EFL37876.1
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
    
 0.688
EFL42524.1
Phosphoglucomutase/phosphomannomutase.
    
  0.620
EFL42583.1
cro/CI family transcriptional regulator.
 
0.618
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.