STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37827.1Squalene synthase HpnD. (316 aa)    
Predicted Functional Partners:
EFL37826.1
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 0.989
EFL38136.1
Phytoene desaturase.
 
 
 0.979
EFL37825.1
Squalene-hopene cyclase.
 
 
 0.951
EFL37828.1
Squalene synthase HpnC.
 
   
0.922
EFL41646.1
FAD dependent oxidoreductase.
 
 
 0.915
EFL39793.1
Trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.900
EFL38135.1
Polyprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.898
EFL38189.1
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.898
EFL41459.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.865
EFL41818.1
Phytoene dehydrogenase.
 
 
 0.835
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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