STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL37828.1Squalene synthase HpnC. (300 aa)    
Predicted Functional Partners:
EFL37827.1
Squalene synthase HpnD.
 
   
0.922
EFL37825.1
Squalene-hopene cyclase.
 
 
 0.921
EFL37826.1
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 0.920
EFL38136.1
Phytoene desaturase.
 
 
 0.836
EFL37822.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.819
EFL37823.1
Phosphorylase.
 
   
 0.780
EFL40406.1
MATE efflux family protein.
   
  
 0.771
EFL41646.1
FAD dependent oxidoreductase.
 
 
 0.755
EFL41818.1
Phytoene dehydrogenase.
 
 
 0.733
EFL38181.1
Conserved hypothetical protein.
 
 
 0.712
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.