STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL37851.1alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family. (363 aa)    
Predicted Functional Partners:
EFL43486.1
Non-ribosomal peptide synthetase/polyketide synthase Ta1; Truncated CDS; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.792
EFL37852.1
DifB protein.
       0.771
EFL37853.1
Saccharopine dehydrogenase.
 
     0.750
EFL37539.1
Condensation domain-containing protein; Unextendable partial coding region.
   
 0.739
EFL37540.1
Condensation domain-containing protein.
   
 0.739
EFL37849.1
Fatty oxidation complex, alpha subunit.
  
 
 0.738
EFL39367.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.730
EFL41244.1
Long-chain specific acyl-CoA dehydrogenase.
 
 
  0.702
EFL38040.1
methylmalonyl-CoA mutase.
    
 0.678
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
     
 0.666
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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