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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL37925.1Transcriptional regulator superfamily protein. (144 aa)    
Predicted Functional Partners:
EFL38957.1
Aminotransferase, class V.
  
 
 0.790
EFL41765.1
Cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent; Belongs to the sulfur carrier protein TusA family.
  
 
 0.790
EFL40673.1
Integral membrane protein.
  
  
 0.660
EFL42007.1
NifU family SUF system FeS assembly protein.
  
  
 0.659
EFL42839.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
      
 0.636
EFL42842.1
Myo-inositol catabolism protein IolC.
      
 0.636
EFL42851.1
phytanoyl-CoA dioxygenase.
      
 0.636
EFL37924.1
Short chain dehydrogenase/reductase family oxidoreductase.
   
   0.620
EFL40502.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
      
 0.472
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
   0.435
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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