Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL37927.1Hypothetical membrane protein. (361 aa)    
Predicted Functional Partners:
EFL40851.1
Secreted protein.
  
  
 0.839
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
 
  
 0.811
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
 
  
 0.768
EFL37557.1
Integral membrane protein.
 
  
 0.765
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
   0.717
EFL38772.1
Conserved hypothetical protein.
 
  
 0.701
EFL39840.1
Membrane protein.
  
  
 0.701
EFL41279.1
Recombinase.
  
     0.669
EFL38929.1
Sensory box/GGDEF domain/EAL domain-containing protein.
  
  
 0.662
EFL41449.1
Nucleotide-binding protein.
  
  
 0.661
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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